Package: scpImaging
Title: Functions for handling cellenONE-based imaging data for
        single-cell experiments
Version: 0.9.9.2
Authors@R: 
    person("Edward", "Emmott", , "e.emmott@liverpool.ac.uk", role = c("aut", "cre"))
Description: This package includes functions for curating,
        manipulating, and visualising cellenONE-based imaging data for
        single-cell experiments. It is designed to work with microscopy
        images and associated metadata produced on the cellenONE
        platform, which is a high-throughput imaging and handling
        system for single-cell analysis. It contains functions to
        process the initial images for downstream analysis in cellPose
        and cellProfiler, as well as for importing and processing the
        data output from these pipelines. It also contains a module for
        interactive visualisation of cellenONE-based images using the
        iSEE package for interactive single-cell experiment
        exploration.
Imports: magick, reticulate, S4Vectors, iSEE, rmarkdown, shiny,
        methods, dplyr, rlang, stringr, SummarizedExperiment, ggplot2,
        patchwork, png, shinyWidgets, QFeatures, SingleCellExperiment
License: MIT License + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Config/pak/sysreqs: cmake libglpk-dev make libmagick++-dev gsfonts
        libicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev perl
        python3 zlib1g-dev
Repository: https://emmottlab.r-universe.dev
Date/Publication: 2025-11-25 12:37:02 UTC
RemoteUrl: https://github.com/emmottlab/scpImaging
RemoteRef: HEAD
RemoteSha: ca948ba151adb8b1057c70961521a062b695b29d
NeedsCompilation: no
Packaged: 2026-10-10 15:35:32 UTC; root
Author: Edward Emmott [aut, cre]
Maintainer: Edward Emmott <e.emmott@liverpool.ac.uk>