{
  "_id": "6a1696deacfb0bcc41d7bd49",
  "Package": "scpImaging",
  "Title": "Functions for handling cellenONE-based imaging data for\nsingle-cell experiments",
  "Version": "0.9.9.2",
  "Authors@R": "person(\"Edward\", \"Emmott\", , \"e.emmott@liverpool.ac.uk\", role = c(\"aut\", \"cre\"))",
  "Description": "This package includes functions for curating,\nmanipulating, and visualising cellenONE-based imaging data for\nsingle-cell experiments. It is designed to work with microscopy\nimages and associated metadata produced on the cellenONE\nplatform, which is a high-throughput imaging and handling\nsystem for single-cell analysis. It contains functions to\nprocess the initial images for downstream analysis in cellPose\nand cellProfiler, as well as for importing and processing the\ndata output from these pipelines. It also contains a module for\ninteractive visualisation of cellenONE-based images using the\niSEE package for interactive single-cell experiment\nexploration.",
  "License": "MIT License + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Config/pak/sysreqs": "cmake libglpk-dev make libmagick++-dev gsfonts\nlibicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev perl\npython3 zlib1g-dev",
  "Repository": "https://emmottlab.r-universe.dev",
  "Date/Publication": "2025-11-25 12:37:02 UTC",
  "RemoteUrl": "https://github.com/emmottlab/scpImaging",
  "RemoteRef": "HEAD",
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    "User": "root"
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  "Author": "Edward Emmott [aut, cre]",
  "Maintainer": "Edward Emmott <e.emmott@liverpool.ac.uk>",
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    "author": "Markella Loi <m.loi2@liverpool.ac.uk>",
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    "description": "Professor of Virology & Proteomics/Wellcome CDA fellow @ Centre for Proteome Research",
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      "page": "addCellProfilerAttributes",
      "title": "'addCellProfilerAttributes()': Add Attributes from a Second Data Frame Based on Keys",
      "topics": [
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      ]
    },
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      "title": "'addCellProfilerAttributesSCE()': Add CellProfiler Attributes to colData of Bioconductor Objects",
      "topics": [
        "addCellProfilerAttributesSCE"
      ]
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      "page": "CellenONEPlot",
      "title": "Create an Instance of a CellenONEPlot Panel",
      "topics": [
        "CellenONEPlot"
      ]
    },
    {
      "page": "CellenONEPlot-class",
      "title": "The CellenONEPlot Class",
      "topics": [
        ".defineDataInterface,CellenONEPlot-method",
        ".defineOutput,CellenONEPlot-method",
        ".definePanelTour,CellenONEPlot-method",
        ".exportOutput,CellenONEPlot-method",
        ".fullName,CellenONEPlot-method",
        ".generateOutput,CellenONEPlot-method",
        ".hideInterface,CellenONEPlot-method",
        ".panelColor,CellenONEPlot-method",
        ".refineParameters,CellenONEPlot-method",
        ".renderOutput,CellenONEPlot-method",
        ".singleSelectionSlots,CellenONEPlot-method",
        "CellenONEPlot-class",
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      "title": "'cleanFilenames()': Clean Hyperlink Formatting from DataFrame Columns",
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      "title": "'countCells()':Count Unique Masks in PNG Segmentation Masks",
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    },
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      "page": "generateImageColumns",
      "title": "generateImageColumns(): Generate Derived Image File Columns",
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    },
    {
      "page": "generateImageColumnsSCE",
      "title": "'generateImageColumnsSCE():' Apply generateImageColumns to Bioconductor Object colData",
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        "generateImageColumnsSCE,QFeatures-method",
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